bump version [skip ci]

fix infinite objects with log scale

Project.toml

@@ -1,7 +1,7 @@
 name = "Plots"
 uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 author = ["Tom Breloff (@tbreloff)"]
-version = "1.3.2"
+version = "1.3.6"
 
 [deps]
 Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
@@ -44,9 +44,9 @@ PGFPlotsX = "1.2.0"
 PlotThemes = "2"
 PlotUtils = "1"
 RecipesBase = "1"
-RecipesPipeline = "0.1.3"
+RecipesPipeline = "0.1.7"
 Reexport = "0.2"
-Requires = "0.5, 1"
+Requires = "1"
 Showoff = "0.3.1"
 StatsBase = "0.32, 0.33"
 julia = "1"

src/args.jl

@@ -583,6 +583,7 @@ add_aliases(:fill_z, :fillz, :fz, :surfacecolor, :surfacecolour, :sc, :surfcolor
 add_aliases(:legend, :leg, :key)
 add_aliases(:legendtitle, :legend_title, :labeltitle, :label_title, :leg_title, :key_title)
 add_aliases(:colorbar, :cb, :cbar, :colorkey)
+add_aliases(:colorbar_title, :colorbartitle, :cb_title, :cbtitle, :cbartitle, :cbar_title, :colorkeytitle, :colorkey_title)
 add_aliases(:clims, :clim, :cbarlims, :cbar_lims, :climits, :color_limits)
 add_aliases(:smooth, :regression, :reg)
 add_aliases(:levels, :nlevels, :nlev, :levs)
@@ -944,8 +945,9 @@ function RecipesPipeline.preprocess_attributes!(plotattributes::AKW)
     replaceAliases!(plotattributes, _keyAliases)
 
     # handle axis args common to all axis
-    args = RecipesPipeline.pop_kw!(plotattributes, :axis, ())
-    for arg in wraptuple(args)
+    args = wraptuple(RecipesPipeline.pop_kw!(plotattributes, :axis, ()))
+    showarg = wraptuple(RecipesPipeline.pop_kw!(plotattributes, :showaxis, ()))
+    for arg in wraptuple((args..., showarg...))
         for letter in (:x, :y, :z)
             process_axis_arg!(plotattributes, arg, letter)
         end

src/axes.jl

@@ -35,7 +35,6 @@ end
 function process_axis_arg!(plotattributes::AKW, arg, letter = "")
     T = typeof(arg)
     arg = get(_scaleAliases, arg, arg)
-
     if typeof(arg) <: Font
         plotattributes[Symbol(letter,:tickfont)] = arg
         plotattributes[Symbol(letter,:guidefont)] = arg

src/backends/pyplot.jl

@@ -13,6 +13,7 @@ append!(Base.Multimedia.displays, otherdisplays)
 pycolors = PyPlot.pyimport("matplotlib.colors")
 pypath = PyPlot.pyimport("matplotlib.path")
 mplot3d = PyPlot.pyimport("mpl_toolkits.mplot3d")
+axes_grid1 = PyPlot.pyimport("mpl_toolkits.axes_grid1")
 pypatches = PyPlot.pyimport("matplotlib.patches")
 pyfont = PyPlot.pyimport("matplotlib.font_manager")
 pyticker = PyPlot.pyimport("matplotlib.ticker")
@@ -660,6 +661,7 @@ function py_add_series(plt::Plot{PyPlotBackend}, series::Series)
             handle = ax."contourf"(x, y, z, levelargs...;
                 label = series[:label],
                 zorder = series[:series_plotindex] + 0.5,
+                alpha = series[:fillalpha],
                 extrakw...
             )
             push!(handles, handle)
@@ -1003,12 +1005,27 @@ function _before_layout_calcs(plt::Plot{PyPlotBackend})
             end
             kw[:spacing] = "proportional"
 
-            # create and store the colorbar object (handle) and the axis that it is drawn on.
-            # note: the colorbar axis is positioned independently from the subplot axis
             fig = plt.o
-            cbax = fig."add_axes"([0.8,0.1,0.03,0.8], label = string(gensym()))
-            cb = fig."colorbar"(handle; cax = cbax, kw...)
+
+            if RecipesPipeline.is3d(sp)
+                cbax = fig."add_axes"([0.9, 0.1, 0.03, 0.8])
+                cb = fig."colorbar"(handle; cax=cbax, kw...)
+            else
+                # divider approach works only with 2d plots
+                divider = axes_grid1.make_axes_locatable(ax)
+                # width = axes_grid1.axes_size.AxesY(ax, aspect=1.0 / 3.5)
+                # pad = axes_grid1.axes_size.Fraction(0.5, width)  # Colorbar is spaced 0.5 of its size away from the ax
+                # cbax = divider.append_axes("right", size=width, pad=pad)   # This approach does not work well in subplots
+                cbax = divider.append_axes("right", size="5%", pad="2.5%")  # Reasonable value works most of the usecases
+                cb = fig."colorbar"(handle; cax=cbax, kw...)
+            end
+
             cb."set_label"(sp[:colorbar_title],size=py_thickness_scale(plt, sp[:yaxis][:guidefontsize]),family=sp[:yaxis][:guidefontfamily], color = py_color(sp[:yaxis][:guidefontcolor]))
+
+            # cb."formatter".set_useOffset(false)   # This for some reason does not work, must be a pyplot bug, instead this is a workaround:
+            cb."formatter".set_powerlimits((-Inf, Inf))
+            cb."update_ticks"()
+
             for lab in cb."ax"."yaxis"."get_ticklabels"()
                   lab."set_fontsize"(py_thickness_scale(plt, sp[:yaxis][:tickfontsize]))
                   lab."set_family"(sp[:yaxis][:tickfontfamily])
@@ -1082,7 +1099,7 @@ function _before_layout_calcs(plt::Plot{PyPlotBackend})
             end
             pyaxis."label"."set_fontsize"(py_thickness_scale(plt, axis[:guidefontsize]))
             pyaxis."label"."set_family"(axis[:guidefontfamily])
-            
+
             if (RecipesPipeline.is3d(sp))
                 pyaxis."set_rotate_label"(false)
             end
@@ -1220,7 +1237,7 @@ function _update_min_padding!(sp::Subplot{PyPlotBackend})
     # optionally add the width of colorbar labels and colorbar to rightpad
     if haskey(sp.attr, :cbar_ax)
         bb = py_bbox(sp.attr[:cbar_handle]."ax"."get_yticklabels"())
-        sp.attr[:cbar_width] = _cbar_width + width(bb) + 2.3mm + (sp[:colorbar_title] == "" ? 0px : 30px)
+        sp.attr[:cbar_width] = _cbar_width + width(bb) + (sp[:colorbar_title] == "" ? 0px : 30px)
         rightpad = rightpad + sp.attr[:cbar_width]
     end
 
@@ -1381,13 +1398,10 @@ function _update_plot_object(plt::Plot{PyPlotBackend})
         pcts = bbox_to_pcts(sp.plotarea, figw, figh)
         ax."set_position"(pcts)
 
-        # set the cbar position if there is one
-        if haskey(sp.attr, :cbar_ax)
+        if haskey(sp.attr, :cbar_ax) && RecipesPipeline.is3d(sp)   # 2D plots are completely handled by axis dividers
             cbw = sp.attr[:cbar_width]
             # this is the bounding box of just the colors of the colorbar (not labels)
-            ex = sp[:zaxis][:extrema]
-            has_toplabel = !(1e-7 < max(abs(ex.emax), abs(ex.emin)) < 1e7)
-            cb_bbox = BoundingBox(right(sp.bbox)-cbw+1mm, top(sp.bbox) +  (has_toplabel ? 4mm : 2mm), _cbar_width-1mm, height(sp.bbox) - (has_toplabel ? 6mm : 4mm))
+            cb_bbox = BoundingBox(right(sp.bbox)-cbw - 2mm, top(sp.bbox) + 2mm, _cbar_width-1mm, height(sp.bbox) -  4mm)
             pcts = bbox_to_pcts(cb_bbox, figw, figh)
             sp.attr[:cbar_ax]."set_position"(pcts)
         end

src/init.jl

@@ -29,49 +29,41 @@ function __init__()
     @require HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" begin
         fn = joinpath(@__DIR__, "backends", "hdf5.jl")
         include(fn)
-        @require Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" Revise.track(Plots, fn)
     end
 
     @require InspectDR = "d0351b0e-4b05-5898-87b3-e2a8edfddd1d" begin
         fn = joinpath(@__DIR__, "backends", "inspectdr.jl")
         include(fn)
-        @require Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" Revise.track(Plots, fn)
     end
 
     @require PGFPlots = "3b7a836e-365b-5785-a47d-02c71176b4aa" begin
         fn = joinpath(@__DIR__, "backends", "deprecated", "pgfplots.jl")
         include(fn)
-        @require Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" Revise.track(Plots, fn)
     end
 
     @require ORCA = "47be7bcc-f1a6-5447-8b36-7eeeff7534fd" begin
         fn = joinpath(@__DIR__, "backends", "orca.jl")
         include(fn)
-        @require Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" Revise.track(Plots, fn)
     end
 
     @require PGFPlotsX = "8314cec4-20b6-5062-9cdb-752b83310925" begin
         fn = joinpath(@__DIR__, "backends", "pgfplotsx.jl")
         include(fn)
-        @require Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" Revise.track(Plots, fn)
     end
 
     @require PlotlyJS = "f0f68f2c-4968-5e81-91da-67840de0976a" begin
         fn = joinpath(@__DIR__, "backends", "plotlyjs.jl")
         include(fn)
-        @require Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" Revise.track(Plots, fn)
     end
 
     @require PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee" begin
         fn = joinpath(@__DIR__, "backends", "pyplot.jl")
         include(fn)
-        @require Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" Revise.track(Plots, fn)
     end
 
     @require UnicodePlots = "b8865327-cd53-5732-bb35-84acbb429228" begin
         fn = joinpath(@__DIR__, "backends", "unicodeplots.jl")
         include(fn)
-        @require Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" Revise.track(Plots, fn)
     end
 
     @require IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" begin

src/recipes.jl

@@ -112,7 +112,7 @@ end
 
 @recipe function f(::Type{Val{:hline}}, x, y, z)
     n = length(y)
-    newx = repeat(Float64[-1, 1, NaN], n)
+    newx = repeat(Float64[1, 2,  NaN], n)
     newy = vec(Float64[yi for i = 1:3, yi in y])
     x := newx
     y := newy
@@ -124,7 +124,7 @@ end
 @recipe function f(::Type{Val{:vline}}, x, y, z)
     n = length(y)
     newx = vec(Float64[yi for i = 1:3, yi in y])
-    newy = repeat(Float64[-1, 1, NaN], n)
+    newy = repeat(Float64[1, 2, NaN], n)
     x := newx
     y := newy
     seriestype := :straightline
@@ -1028,7 +1028,7 @@ end
 
 function error_style!(plotattributes::AKW)
     plotattributes[:seriestype] = :path
-    plotattributes[:markercolor] = plotattributes[:markerstrokecolor] 
+    plotattributes[:markercolor] = plotattributes[:markerstrokecolor]
     plotattributes[:linewidth] = plotattributes[:markerstrokewidth]
     plotattributes[:label] = ""
 end

src/utils.jl

@@ -420,7 +420,7 @@ ylims(sp_idx::Int = 1) = ylims(current(), sp_idx)
 zlims(sp_idx::Int = 1) = zlims(current(), sp_idx)
 
 # These functions return an operator for use in `get_clims(::Seres, op)`
-process_clims(lims::NTuple{2,<:Number}) = (zlims -> ifelse.(isfinite.(lims), lims, zlims)) ∘ ignorenan_extrema
+process_clims(lims::Tuple{<:Number,<:Number}) = (zlims -> ifelse.(isfinite.(lims), lims, zlims)) ∘ ignorenan_extrema
 process_clims(s::Union{Symbol,Nothing,Missing}) = ignorenan_extrema
 # don't specialize on ::Function otherwise python functions won't work
 process_clims(f) = f
@@ -988,7 +988,7 @@ px2inch(px::Real)       = float(px / PX_PER_INCH)
 inch2mm(inches::Real)   = float(inches * MM_PER_INCH)
 mm2inch(mm::Real)       = float(mm / MM_PER_INCH)
 px2mm(px::Real)         = float(px * MM_PER_PX)
-mm2px(mm::Real)         = float(px / MM_PER_PX)
+mm2px(mm::Real)         = float(mm / MM_PER_PX)
 
 
 "Smallest x in plot"
@@ -1079,10 +1079,21 @@ end
 function straightline_data(series, expansion_factor = 1)
     sp = series[:subplot]
     xl, yl = isvertical(series) ? (xlims(sp), ylims(sp)) : (ylims(sp), xlims(sp))
-    x, y = series[:x], series[:y]
+
+    # handle axes scales
+    xscale = sp[:xaxis][:scale]
+    xf = RecipesPipeline.scale_func(xscale)
+    xinvf = RecipesPipeline.inverse_scale_func(xscale)
+    yscale = sp[:yaxis][:scale]
+    yf = RecipesPipeline.scale_func(yscale)
+    yinvf = RecipesPipeline.inverse_scale_func(yscale)
+
+    xl, yl = xf.(xl), yf.(yl)
+    x, y = xf.(series[:x]), yf.(series[:y])
     n = length(x)
-    if n == 2
-        return straightline_data(xl, yl, x, y, expansion_factor)
+
+    xdata, ydata = if n == 2
+        straightline_data(xl, yl, x, y, expansion_factor)
     else
         k, r = divrem(n, 3)
         if r == 0
@@ -1091,11 +1102,13 @@ function straightline_data(series, expansion_factor = 1)
                 inds = (3 * i - 2):(3 * i - 1)
                 xdata[inds], ydata[inds] = straightline_data(xl, yl, x[inds], y[inds], expansion_factor)
             end
-            return xdata, ydata
+            xdata, ydata
         else
             error("Misformed data. `straightline_data` either accepts vectors of length 2 or 3k. The provided series has length $n")
         end
     end
+
+    return xinvf.(xdata), yinvf.(ydata)
 end
 
 function straightline_data(xl, yl, x, y, expansion_factor = 1)
@@ -1127,20 +1140,28 @@ end
 function shape_data(series, expansion_factor = 1)
     sp = series[:subplot]
     xl, yl = isvertical(series) ? (xlims(sp), ylims(sp)) : (ylims(sp), xlims(sp))
+
+    # handle axes scales
+    xscale = sp[:xaxis][:scale]
+    xf = RecipesPipeline.scale_func(xscale)
+    xinvf = RecipesPipeline.inverse_scale_func(xscale)
+    yscale = sp[:yaxis][:scale]
+    yf = RecipesPipeline.scale_func(yscale)
+    yinvf = RecipesPipeline.inverse_scale_func(yscale)
+
     x, y = copy(series[:x]), copy(series[:y])
-    factor = 100
     for i in eachindex(x)
         if x[i] == -Inf
-            x[i] = xl[1] - expansion_factor * (xl[2] - xl[1])
+            x[i] = xinvf(xf(xl[1]) - expansion_factor * (xf(xl[2]) - xf(xl[1])))
         elseif x[i] == Inf
-            x[i] = xl[2] + expansion_factor * (xl[2] - xl[1])
+            x[i] = xinvf(xf(xl[2]) + expansion_factor * (xf(xl[2]) - xf(xl[1])))
         end
     end
     for i in eachindex(y)
         if y[i] == -Inf
-            y[i] = yl[1] - expansion_factor * (yl[2] - yl[1])
+            y[i] = yinvf(yf(yl[1]) - expansion_factor * (yf(yl[2]) - yf(yl[1])))
         elseif y[i] == Inf
-            y[i] = yl[2] + expansion_factor * (yl[2] - yl[1])
+            y[i] = yinvf(yf(yl[2]) + expansion_factor * (yf(yl[2]) - yf(yl[1])))
         end
     end
     return x, y

test/runtests.jl

@@ -9,6 +9,7 @@ using LibGit2
 using GeometryTypes
 using Dates
 
+include("test_axes.jl")
 include("test_hdf5plots.jl")
 include("test_pgfplotsx.jl")
 
@@ -178,4 +179,9 @@ end
         @test isequal(collect(zip(Plots.unzip(z)...)), z)
         @test isequal(collect(zip(Plots.unzip(GeometryTypes.Point.(z))...)), z)
     end
+    op1 = Plots.process_clims((1.0, 2.0))
+    op2 = Plots.process_clims((1, 2.0))
+    data = randn(100, 100)
+    @test op1(data) == op2(data)
+    @test Plots.process_clims(nothing) == Plots.process_clims(missing) == Plots.process_clims(:auto)
 end

test/test_axes.jl

@@ -0,0 +1,14 @@
+using Plots, Test
+
+@testset "Showaxis" begin
+    for value in Plots._allShowaxisArgs
+        @test plot(1:5, showaxis = value)[1][:yaxis][:showaxis] isa Bool
+    end
+    @test plot(1:5, showaxis = :y)[1][:yaxis][:showaxis] == true
+    @test plot(1:5, showaxis = :y)[1][:xaxis][:showaxis] == false
+end
+
+@testset "Magic axis" begin
+    @test plot(1, axis=nothing)[1][:xaxis][:ticks] == []
+    @test plot(1, axis=nothing)[1][:yaxis][:ticks] == []
+end # testset